Ubuntu 14.04.3 Deployable VM Image for Phylogenetics and RADseq
| dc.altmetrics.display | false | |
| dc.contributor.author | Chafin, Tyler K | |
| dc.date.accessioned | 2017-10-20T08:20:11Z | |
| dc.date.available | 2017-10-20T08:20:11Z | |
| dc.date.issued | 2017-2-27 | |
| dc.description.abstract | Jetstream image based on Ubuntu 14.04.3 including multiple common software packages for processing and phylogenetic analysis of RADseq data. v2.0 as of February 27, 2017: Added numerous packages, as well as environmental modules (e.g. "module avail") for package management. Added software: ABYSS, Anadonda (Python 2.7), Anaconda (Python 3.6), BBmap, BEAST, BEDtools, Bowtie2, BWA, CD-HIT, EXaML, fineRADstructure, HyDE, IpyRAD, LINKS, Migrate-N, MrBayes, MUSCLE, NCBI-BLAST+, OPERA-LG, PartitionFinder2, PEAR, pyRAD, RAxML, R (3.3.2 + common genetics packages), R (3.1.1), SAMtools, SOAPdenovo2, Structure, Trimmomatic, Vsearch. | |
| dc.description.statementofresponsibility | I certify that there is no sensitive data/information (including that subject to local, state, or federal laws such as HIPAA) within what I plan to publish via IU Scholarworks and take personal legal responsibility for the impact and costs of any sensitive data/information should such data/information be found in the materials I plan to store. | |
| dc.identifier.doi | https://doi.org/10.5967/P9GT0K | |
| dc.identifier.uri | https://hdl.handle.net/2022/21754 | |
| dc.language.iso | en | |
| dc.publisher | not given | |
| dc.relation.isversionof | https://datacore.iu.edu/concern/data_sets/ms35t988b | |
| dc.rights | Except where otherwise noted this content is released under the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/). This license includes the following terms: You are free to share - to copy, distribute and transmit the work and to remix - to adapt the work under the following conditions: attribution - you must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). For any reuse or distribution, you must make clear to others the license terms of this work. | |
| dc.rights.uri | http://creativecommons.org/licenses/by/3.0/ | |
| dc.title | Ubuntu 14.04.3 Deployable VM Image for Phylogenetics and RADseq | |
| dc.type | Virtual Machine Image |
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