Ubuntu 14.04.3 Deployable VM Image for Phylogenetics and RADseq

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Date

2017-2-27

Authors

Journal Title

Journal ISSN

Volume Title

Publisher

not given

Permanent Link

https://hdl.handle.net/2022/21754

Abstract

Jetstream image based on Ubuntu 14.04.3 including multiple common software packages for processing and phylogenetic analysis of RADseq data. v2.0 as of February 27, 2017: Added numerous packages, as well as environmental modules (e.g. "module avail") for package management. Added software: ABYSS, Anadonda (Python 2.7), Anaconda (Python 3.6), BBmap, BEAST, BEDtools, Bowtie2, BWA, CD-HIT, EXaML, fineRADstructure, HyDE, IpyRAD, LINKS, Migrate-N, MrBayes, MUSCLE, NCBI-BLAST+, OPERA-LG, PartitionFinder2, PEAR, pyRAD, RAxML, R (3.3.2 + common genetics packages), R (3.1.1), SAMtools, SOAPdenovo2, Structure, Trimmomatic, Vsearch.

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Citation

DOI

https://doi.org/10.5967/P9GT0K

Link(s) to data and video for this item

Relation

http://purl.dlib.indiana.edu/iusw/data/2022/21754/phylogentetics.raw.gz

Rights

Except where otherwise noted this content is released under the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/). This license includes the following terms: You are free to share - to copy, distribute and transmit the work and to remix - to adapt the work under the following conditions: attribution - you must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). For any reuse or distribution, you must make clear to others the license terms of this work.
 http://creativecommons.org/licenses/by/3.0/

Type

Virtual Machine Image

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Images