Summary of the National Center for Genome Analysis Support (NCGAS) 2018-2019 de Novo Transcriptome Workflow and Workshops

Abstract
The National Center for Genome Analysis Support (NCGAS) has held a workshop entitled "de novo Assembly of Transcriptomes using HPC Resources" three times between April 2018 and May 2019. These workshops were in serving NCGAS's mission of enabling the biological research community to analyze, understand, and make use of the genomic information now available by packaging our now seven years of experience assisting with de novo transcriptome assemblies and running High Performance Computing (HPC) resources into a documented, easily approachable workflow for our users. The workshops covered common questions and problems that our users have had in HPC (such as job handling, resource availability, data management, and troubleshooting) and in the construction of transcriptomes (such as software choices, combination of assemblies, and downstream analyses). The three-day workshops also highlighted the available resources for US scientists, concentrating heavily on available XSEDE resources for analyses, visualization, and archiving of data.
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Keywords
NCGAS, Workshop Design
Citation
Sanders, S., C. Ganote, B. Papudeshi, C. Stewart. T. Doak. (2019) “Summary of the National Center for Genome Analysis Support (NCGAS) 2018-2019 de Novo Transcriptome Workflow and Workshops”, Indiana University, Bloomington, IN. PTI Technical Report. Retrieved from http://hdl.handle.net/2022/24887
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