Show simple item record Sanders, Sheri Ganote, Carrie Papudeshi, Bhavya Doak, Tom 2018-02-05T21:48:34Z 2018-02-05T21:48:34Z 2018-01-14
dc.identifier.citation Sanders, S., C. Ganote, B. Papudeshi, and T. Doak. (2018). National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream. Plant and Animal Genomics 2018, San Diego, CA. Retrieved from en
dc.description.abstract The National Center for Genome Analysis Support (NCGAS) helps the biological community analyze, understand, and make use of the vast amount of genomic information now available. To this end, NCGAS develops and supports genome browsers for several genomics projects, using Tripal as its front end for the last year. Since the adoption of Tripal, we’ve modified some of the tools to develop features our users find useful. We will introduce our groups’ projects and give a demo of these tools in our browsers. These tools include: 1) Modifications to tripal_blast module to link blast reports to external JBrowse sites through URL manipulation—allowing visualization against potentially any browser with publicly available data with which to build a blast database. 2) A GUI based web tool to spin up new JBrowse instances, with on-the-fly GUI-based track addition/removal, which allows for more flexible community visualization. 3) Finally, we will demo the virtual machine image built on the XSEDE cloud (Jetstream) with Tripal, JBrowse, and these tools installed - allowing for free genome browser hosting with minimal command line use. It is our hope that these tools will reduce the learning curve required to make use of Tripal genome visualization tools. en
dc.description.sponsorship This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University. en
dc.language.iso en en
dc.publisher Plant and Animal Genomics 2018 en
dc.rights Except where otherwise noted, the contents of this presentation are copyright of the Trustees of Indiana University. This license includes the following terms: You are free to share -to copy, distribute and transmit the work and to remix -to adapt the work under the following conditions: attribution -you must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). For any reuse or distribution, you must make clear to others the license terms of this work. en
dc.rights.uri en
dc.subject NCGAS, Jetstream, Genome Browsers en
dc.title National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream en
dc.type Presentation en

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