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National Center for Genome Analysis Support

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Consortium for Top Down Proteomics (CTDP) [17]

http://topdownproteomics.org/

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Data [0]
Peer-reviewed Publications [2]
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Presentations [87]
Technical reports (not peer-reviewed) [19]
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Recent Submissions

Title: NCGAS 2021 Annual User Assessment Summary Report Author: Jankowski, Harmony; Wernert, Julie; Sanders, Sheri Date: 2021-06-30
Title: NCGAS 2020 Annual User Survey Author: Wernert, Julie; Sanders, Sheri; Papudeshi, Bhavya; Jankowski, Harmony Date: 2020-10-26
Title: NCGAS NSF Annual Report, September 1, 2019 – August 31, 2020 Author: Sanders, Sheri; Doak, Thomas; Snapp-Childs, Winona; Hahn, Matthew; Ye, Yuzhen; Stewart, Craig Date: 2020-09-09
Title: Harvesting Field Station Data: Automating Raspberry Pi Sensors to Collaborative Websites, and Update Author: Sanders, Sheri; Foran, Eliza; Guido, Emmanuel; Anderson, Jazzly; Slayton, Thomas; Doak, Thomas Date: 2019-09-09
Title: Genome and transcriptome analysis of fish tapeworm Nippotaenia percotti through scientific collaboration between research labs and national cyberinfrastructure. Author: Papudeshi, Bhavya; Chafin, Tyler K; Sanders, Sheri A; Ganote, Carrie; Reshetnikov, Andrey N; Sokolov, Sergey G; Doak, Thomas; Pummill, Jeff F; Douglas, Marlis R.; Douglas, Michael E. Date: 2020-01-13
Title: National Center for Genome Analysis Support (NCGAS): Genomics and other Science in the NSF-Funded Jetstream Cloud Author: Doak, Thomas; Sanders, Sheri; Ganote, Carrie; Papudeshi, Bhavya; Fischer, Jeremy; Hancock, David Y. Date: 2020-01-13
Title: Mining Microbial Genomes from Datasets on the Sequence Read Archive Author: Papudeshi, Bhavya; Leffler, Haley; Ganapanei, Sruthi; Sanders, Sheri; Ganote, Carrie; Doak, Thomas Date: 2020-01-15
Title: ABI Sustaining: The National Center for Genome Analysis Support 2019 Annual Report Author: Doak, Thomas; Stewart, Craig; Henschel, Robert; Ye, Yuzhen Date: 2019-09-10
Title: Summary Report on Scaling the Introduction to R for Biologists Workshop by National Center for Genome Analysis Support (NCGAS) to a Massive Open Online Course (MOOC) Author: Sanders, Sheri; Doak, Thomas; Ganote, Carrie; Papudeshi, Bhavya; Stewart, Craig Date: 2019-12-10
Title: Summary of the National Center for Genome Analysis Support (NCGAS) 2018-2019 de Novo Transcriptome Workflow and Workshops Author: Sanders, Sheri; Doak, Thomas; Ganote, Carrie; Papudeshi, Bhavya; Stewart, Craig Date: 2019-12-10
Title: NCGAS Annual User Assessment 2019 Summary Report Author: Wernert, Julie A.; Jankowski, Harmony Date: 2019-09
Title: Navigating the Sequence Read Archive to identify crAssphage, an ubiquitous inhabitant of the human microbiome Author: Cai, Jasmine X.; Weathers, Jania G.; Leffler, Haley; Ganapaneni, Sruthi; Papudeshi, Bhavya; Sanders, Sheri; Doak, Thomas G. Date: 2019-07-14
Title: A workflow to identify genomes in the Sequence Read Archive for phylogenomic analysis Author: Leffler, Haley; Ganapaneni, Sruthi; Papudeshi, Bhavya; Ganote, Carrie; Sanders, Sheri; Doak, Thomas G. Date: 2019-06-23
Title: Harvesting Field Station Data: Automating Data Flow from Raspberry Pi Sensors to Collaborative Websites Author: Sanders, Sheri; Guido, Emmanuel; Anderson, Jazzly; Slayton, Thomas; Doak, Thomas G. Date: 2018-09-22
Title: Developing a workflow for bioacoustic recording devices and frog call analysis within Jetstream Author: Foran, Eliza; Anderson, Jazzly; Slayton, Thomas; Guido, Emmanuel; Doak, Thomas; Sanders, Sheri Date: 2019-04-12
Title: Mining the Sequence Read Archive to identify crAssphage, a ubiquitous inhabitant of the human microbiome, in dog and pig samples Author: Leffler, Haley; Ganapaneni, Sruthi; Papudeshi, Bhavya; Sanders, Sheri; Doak, Thomas Date: 2019-04-12
Title: Coupling metagenomics with high-performance computing to mine the Sequence Read Archive (SRA) to analyze Pseudomonas phage PAK-P1 Author: Ganapaneni, Sruthi; Leffler, Haley; Papudeshi, Bhavya; Sanders, Sheri; Doak, Thomas Date: 2019-04-12
Title: Population Genetics of Tree Swallows, in Collaboration with NCGAS Author: Sanders, Sheri; Papudeshi, Bhavya; Ganote, Carrie; Doak, Tom; Mansfield, Charles; Tseng, Chi Yen; Custer, Thomas; Custer, Christine; Matson, Cole Date: 2019-01-14
Title: The Genome of Fish Tapeworm Nippotaenia percotti as a Potential Bookmark for Gene Loci that Facilitates Anthropogenic Infection. Author: Sanders, Sheri; Papudeshi, Bhavya; Ganote, Carrie; Doak, Tom; Chafin, Tyler; Reshetnikov, Andrey; Sokolov, Sergey; Pummil, Jeff; Douglas, Marlis; Douglas, Michael Date: 2019-01-14
Title: Compute resources available to the research community for microbiome analysis Author: Papudeshi, Bhavya; Sanders, Sheri; Ganote, Carrie; Doak, Tom Date: 2019-01-16

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