Browsing by Author "Foster, Patricia L"

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List of base-pair substitutions and indels in "New complexities of SOS-induced "untargeted" mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing"
(2020) NIccum, Birttany A; Coplen, Chistopher P; Lee, Heewook; Mohammed Ismail, Wazim; Tang, Haixu; Foster, Patricia L
List of base-pair substitutions and indels in "New complexities of SOS-induced "untargeted" mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing"
List of base-pair substitutions found in 21 mutation accumulation lines of Wild-type 6K (E. coli PFM2)
(2012-09-19) Lee, Heewook; Popodi, Ellen; Tang, Haixu; Foster, Patricia L
List of base-pair substitutions found in 21 mutation accumulation lines of Wild-type 6K (E. coli PFM2)
List of base-pair substitutions found in 34 mutation accumulation lines of MutL deficient (MutL-) strain of E. coli PFM2 from Lee et al. PNAS (2012) - doi:10.1073/pnas.1210309109
(2012-09-18) Lee, Heewook; Popodi, Ellen; Tang, Haixu; Foster, Patricia L
List of base-pair substitutions found in 34 mutation accumulation lines of MutL deficient (MutL-) strain of E. coli PFM2
List of base-pair substitutions found in 38 mutation accumulation lines of Wild-type 3K (E. coli PFM2) from Lee et al. PNAS (2012) - doi:10.1073/pnas.1210309109
(2012-09-18) Lee, Heewook; Popodi, Ellen; Tang, Haixu; Foster, Patricia L
List of base-pair substitutions found in 38 mutation accumulation lines of Wild-type (E. coli PFM2)
List of base-pair substitutions found in Mutation Accumulation lines of Escherichia coli K-12 PFM2 and its derivative strains (DNA repair)
Foster, Patricia L; Lee, Heewook; Popodi, Ellen M; Towns, Jesse P; Tang, Haixu
List of base-pair substitutions found in mutation accumulation of the following E. coli strains: 1. K12 PFM2 (LB) 2. K12 PFM2 (minimal) 3. ED1a 4. IAI1 5. PFM101 6. PFM133 7. PFM35 8. PFM40 9. PFM88 10. PFM180 11. PFM22 12. PFM91 13. PFM61 14. PFM6 15. PFM94. Foster 2018.xlsx contains base-pair substitutions from Genetics doi: 10.1534/genetics.118.301237. Niccum 2018.xlsx contains base-pair substitutions and indels from Genetics 2018 doi: 10.1534/genetics.117.300515.
List of base-pair substitutions in "The symmetrical pattern of base-pair substitutions rates across the chromosome in Escherichia coli has multiple causes"
Niccum, Brittany A; Lee, Heewook; Ismail, Wazim Mohammed; Tang, Haixu; Foster, Patricia L
List of BPS identified in Niccum et al "The symmetrical pattern of base-pair substitutions rates across the chromosome in Escherichia coli has multiple causes"
Supplemental Data for "DNA Replication-transcription conflicts do not significantly contribute to spontaneous mutations due to replication errors in Escherichia coli."
(2021-10) Foster, Patricia L; Niccum, Brittany A; Lee, Heewook
Supplemental Data for “DNA Replication-transcription conflicts do not significantly contribute to spontaneous mutations due to replication errors in Escherichia coli.” By Patricia L. Foster, Brittany A. Niccum, and Heewook Lee mBio Volume 12 Issue 5 e02503-21 DOI:10.1128/mBio.02503-21