Browsing by Author "Fischer, Jeremy"
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Item Acceptance Test Results for the Jetstream2 Production Environment(2022-04-19) Hancock, David Y.; Turner, George; Weakley, Le Mai; Teige, Scott; Lowe, J. Michael; Bird, Stephen; Michael, Scott; Martin, Chris; Fischer, Jeremy; Snapp-Childs, Winona; Pierce, Marlon; Marru, Suresh; Wannipurage, DimuthuItem "Best Practices and Models for Sustainability for Robust Cyberinfrastructure Software” - Survey Dataset and Analyses(2014-02-14) Wernert, Julie; Wernert, Eric; Fischer, Jeremy; Terhune, Heather; Bowers, Ashley; Miller, Therese; Stewart, Craig A.This document represents the data (and associated analysis) collected in the 2012 Software Sustainability Survey, conducted as part of the National Science Foundation EAGER grant (NSF Award #1147606, PI Craig Stewart, et al.) entitled “Best Practices and Models for Sustainability for Robust Cyberinfrastructure Software.” The survey aimed to identify the best practices and models required for developing, deploying, and supporting robust, sustainable cyberinfrastructure software, as well as to identify key factors users consider in software adoption. Further, the survey attempted to aggregate attitudes about the importance of sustained software in scientific research.Item Bioinformatic analysis using Jetstream, a cloud computing environment(Plant and Animal Genomics 2018, 2018-01-15) Papudeshi, Bhavya; Sanders, Sheri; Ganote, Carrie; Fischer, Jeremy; Doak, TomNational Center for Genome Analysis Support (NCGAS) assists researchers in addressing the scientific challenges of understanding and analyzing the wealth of gene sequence information now available. This includes on-boarding biology professionals who lack the necessary computational background to run their analyses on high-performance computing systems. Virtual machines help with the transition to command line use, software installation, and running analysis in the Linux environment (as most high-performance computing clusters). Jetstream (https://jetstream-cloud.org/) is a cloud computing resource that provides access to preconfigured virtual machines, making the transition relatively effortless, flattening the learning curve needed to get results from experiments that otherwise produce an untenable amount of data. Currently, over 14% of all allocations of usage on Jetstream are for biology other than protein folding – the majority of this being some sort of genomic analysis. NCGAS currently hosts over 123 genome analysis and bioinformatics software titles on Jetstream as preconfigured virtual machines. In this digital tool and resources workshop, we will demonstrate on how to set up Jetstream accounts, start a preconfigured virtual machine, and run genomic analysis on this virtual machine (https://ncgas.org/Blog_Posts/Getting%20Started%20on%20Jetstream.php). Jetstream also provides environments for prototyping and publishing tailored workflows that gives researchers access to interactive computing and data analysis resources on demand.Item CentOS 6 (6.7) Development(2016-03-31) Fischer, Jeremy; Stewart, CraigItem CentOS 6 (6.7) Development GUI(2016-03-31) Fischer, Jeremy; Stewart, CraigItem CentOS 7 (7.2) Development(2016-03-31) Fischer, Jeremy; Stewart, CraigItem Cyberinfrastructure as a platform to facilitate effective collaboration between institutions and support collaboratories(2016-11-06) Coulter, Eric; Fischer, Jeremy; Hallock, Barbara; Knepper, Richard; Lifka, David; Navarro, J. P.; Pierce, Marlon; Stewart, Craig A.Item Datasets Published by the IU Pervasive Technology Institute 1999-2019(2020-08-26) Stewart, Craig A.; Plale, Beth; Fischer, JeremyItem Image is Everything: Dynamic HPC VM Repositories using Murano(2016-10-27) Lowe, John Michael; Budden, Robert; Fischer, JeremyItem Innovations from the early user phase on the Jetstream Research Cloud(2016-06) Knepper, Richard; Fischer, Jeremy; Stewart, Craig A.; Stewart, Craig A.; Hancock, David Y.; Link, Matthew R.Item Jetstream (NSF Award 1445604) Annual Report: December 1, 2018 – November 28, 2019(2019-11-26) Hancock, David Y; Merchant, Nirav; Lowe, John Michael; Fischer, Jeremy; Liming, Lee; Taylor, James; Afgan, Enis; Turner, George; Skidmore, Edwin; Beck, Brain W.; Snapp-Childs, Winona; Foster, Ian; Vaughn, MatthewItem Jetstream (NSF Award 1445604) Program Year 3 Annual Report (December 1, 2016 – November 28, 2017)(2017-12-15) Stewart, Craig A.; Hancock, David Y.; Merchant, Nirav; Lowe, John Michael; Fischer, Jeremy; Liming, Lee; Taylor, James; Afgan, Enis; Turner, George; Skidmore, Edwin; Packard, Michael; Beck, Brain W.; Foster, Ian; Vaughn, MatthewItem Jetstream (NSF Award 1445604) Year Program Year 2 Annual Report (Dec 1, 2015 – Nov 30, 2016)(2016-12-31) Stewart, Craig A.; Hancock, David Y.; Vaughn, Matthew; Merchant, Nirav; Lowe, John Michael; Fischer, Jeremy; Liming, Lee; Taylor, James; Afgan, Enis; Turner, George; Hammond, Bret; Skidmore, Edwin; Packard, Michael; Foster, IanItem Jetstream - In production & ready to go(2016-12-04) Stewart, Craig A.; Fischer, JeremyItem Jetstream 2017 User Satisfaction Survey(2017-11-28) Stewart, Craig A.; Hancock, David Y.; Wernert, Julie; Miller, Therese; Snapp-Childs, Winona; Fischer, Jeremy; Turner, GeorgeMeasurement instrument for the 2017 Jetstream User Satisfaction Survey. The purpose of the survey was to assess current levels of usage and satisfaction with the Jetstream cloud system and its associated resources and services.Item Jetstream NSF Annual Report December 1, 2019 – November 30, 2020(2020) Hancock, David Y.; Merchant, Nirav; Lowe, J. Michael; Fischer, Jeremy; Liming, Lee; Taylor, James; Afgan, Enis; Turner, George; Skidmore, Edwin; Beck, Brian; Snapp-Childs, Winona; Foster, Ian; Vaughn, MatthewItem Jetstream Overview - Prepared for 2016 i-Light Conference(2016-06) Fischer, JeremyThe presentation describes the motivation behind Jetstream, its functions, hardware configuration, software environment, user interface, design, use casesItem Jetstream overview -- what it is, how to apply for use(2017-03-08) Stewart, Craig A.; Hancock, David Y.; Fischer, JeremyItem Jetstream Overview – Prepared for 2016 ESIP Winter Meeting(2016-01) Fischer, JeremyThe presentation describes the motivation behind Jetstream, its functions, hardware configuration, software environment, user interface, design, use casesItem Jetstream Stakeholder Advisory Board Meeting February 2017: Presenters’ Report(2017-02-28) Stewart, Craig A.; Hancock, David Y.; Vaughn, Matthew; Merchant, Nirav; Lowe, John Michael; Fischer, Jeremy; Liming, Lee; Taylor, James; Turner, George; Hammond, C. Bret; Skidmore, Edwin; Packard, Michael; Miller, Therese; Foster, Ian; Rad, Paul; Mehringer, Susan
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