Presentations
Permanent link for this collectionhttps://hdl.handle.net/2022/14534
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Browsing Presentations by Author "Barnett, William K."
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Item High Performance Data Management and Computational Architectures for Genomics Research at National and International Scales(2012-06-07) Barnett, William K.; LeDuc, RichardSummary: Changing genomics analytical needs; NCGAS and its mission; NCGAS cyberinfrastructure; the 100 Gigabit demonstration; scaling genomics analysis; the NCGAS research model; and outcomes for life sciences researchItem A Nation-Wide Area Networked File System for Very Large Scientific Data(2012-04-25) Barnett, William K.; LeDuc, RichardSequencing is creating analytical problems that cannot be solved at sequencing centers or labs. Bioinformatics support, storage, data transfer, and computation all needed to do the science. NCGAS provides a model of a scaled infrastructure for biologists who cannot become bioinformaticians to accomplish their research.Item The National Center for Genome Analysis and Support(2013-01-13) LeDuc, Richard; Barnett, William K.Item The National Center for Genome Analysis Support (Poster)(2012-09) Doak, Thomas G.; LeDuc, Richard; Wu, Le-Shin; Stewart, Craig A.; Henschel, Robert; Barnett, William K.Item National Center for Genome Analysis Support (Poster)(2012) Doak, Thomas G.; Wu, Le-Shin; Stewart, Craig A.; Henschel, Robert; Barnett, William K.Item The National Center for Genome Analysis Support and Galaxy(2012-07-27) LeDuc, Richard D.; Barnett, William K.The National Center for Genome Analysis Support is an NSF funded resource designed to supply bioinformatic support and computational infrastructure to genomics projects requiring large RAM computational resources – specifically de novo sequence assembly. We are developing a national scale infrastructure to support biological researchers that will use Galaxy to interface between the biologists and the cyberinfrastructure. The ability of NCGAS to assist with bioinformatic software optimization was recently demonstrated by our assistance in optimizing the runtime performance of Trinity resulting in over 3x speed improvement.Item National Center for Genome Analysis Support Leverages XSEDE Resources to Support Life Scientists(2013-07-23) Barnett, William K.; LeDuc, Richard D.Item NCGAS (Poster at AMIA Translational Bioinformatics Summit)(2013-03) Barnett, William K.; LeDuc, Richard D.Item Next Generation Cyberinfrastructures for Next Generation Sequencing and Genome Science(2013-06-05) Barnett, William K.; LeDuc, RichardItem Optimizing the National Cyberinfrastructure for Lower Bioinformatic Costs: Making the Most of Resources for Publicly Funded Research(2013-06-20) Barnett, William K.; LeDuc, Richard D.Overviews of NCGAS mission, cyberinfrastructure, and server-on-demand resources and of XSEDE for larger-scale resources.Item Providing National Cyberinfrastructure to Biologists, esp. genomicists(2015-03-23) Barnett, William K.; Doak, Thomas G.The presentation outlines the science and research addressed by NCGAS, the resources NCGAS provides, and the near- to-mid-term future of bioinformatics research.