README FILE FOR Genes of Daphnia magna reconstructed with EvidentialGene Created by: Donald G. Gilbert 1001 E. 3rd St. Bloomington, IN, 47405 gilbertd@indiana.edu or gilbert.bionet@gmail.com --------------------------------------- LOCATION http://hdl.handle.net/2022/22631 --------------------------------------- DOI https://doi.org/10.5967/npn4-sd09 --------------------------------------- FOLDERS AND FILES LIST README.txt 2018-Aug rnasource_daphmag_sra.txt 2015-Jun docs/ docs/PerfectGenesDaphmagna2012.pdf 2012-May, 3.1M docs/daphmag_chrassemblies_201512.txt 2016-Jan orthology/ orthology/arp7s10f-or1inpar-count.tab 2014-Oct orthology/arp7s10f-orsinpar-count.tab 2014-Oct orthology/arp7s10f-orthomcl-1to1n.tab 2014-Oct orthology/arp7s10f-orthomcl-count.tab 2014-Oct orthology/arp7s10f-orthomcl-gclass.tab 2014-Oct orthology/arp7s10f-orthomcl-gcommon.tab 2014-Oct orthology/arp7s10f18b-avematch.tab 2014-Oct orthology/arp7s10f18b-avematcharp.tab 2014-Oct orthology/arp7s10f_genes.ugp.txt.gz 2014-Oct, 5.6M orthology/arp7s10f_genes.ugp.xml.gz 2014-Oct, 6.1M orthology/arp7s10f_genes.ugp_brief.txt.gz 2014-Oct orthology/arp7s10f_omclgn.consensus_def.txt 2014-Oct, 2.2M orthology/arp7s10f_omclgn.tab 2014-Oct, 6.0M orthology/arp7s10f_omclgn2sum.tab 2014-Oct, 14M orthology/arp7s10f_omsubgrp1.list 2014-Oct orthology/arp7s10f_omsubgrp1.names 2014-Oct orthology/dmagset7fin9.orpar.tab 2014-Oct, 16M orthology/omclevgrunarp7c.sh 2014-Sep proteins/ proteins/README.txt 2018-Mar proteins/README.txt.orig 2015-May proteins/arp7s10b14nodmag.aa.gz 2014-Sep, 74M proteins/arp7s10b14nodmag.aa.qual 2014-Sep, 19M proteins/arp7s10b14nodmag.species.txt 2014-Oct proteins/dmagset7finalt9b.puban.aa.gz 2014-Oct, 36M proteins/dmagset7finloc9b.puban.aa.gz 2014-Oct, 10M proteins/protein_names/ proteins/protein_names/daphmag.names 2014-Oct, 1.6M proteins/protein_names/daphplx.names 2014-Jan, 1.7M proteins/protein_names/dromel.names 2014-Aug proteins/protein_names/honbee.names 2014-Aug, 1.4M proteins/protein_names/human.names 2013-Oct, 3.1M proteins/protein_names/mayzebr.names 2013-Oct, 2.6M proteins/protein_names/nasvit.names 2014-Jan, 1.3M proteins/protein_names/penmon.names 2014-Aug, 1.3M proteins/protein_names/pogcha.names 2014-Aug, 1.2M proteins/protein_names/tribcas.names 2014-Aug, 1.1M publicset/ publicset/README.txt 2016-Nov publicset/dmagset7finall9b.attr.gfi.gz 2014-Oct, 12M publicset/dmagset7finall9b.attr.tbl.gz 2014-Oct, 13M publicset/dmagset7finall9b.attr.xml.gz 2014-Oct, 25M publicset/dmagset7finall9b.clonesource.tbl 2015-Apr, 2.4M publicset/dmagset7finalt9b.puban.aa.gz 2014-Oct, 36M publicset/dmagset7finalt9b.puban.cds.gz 2014-Oct, 62M publicset/dmagset7finalt9b.puban.gff.gz 2014-Sep, 28M publicset/dmagset7finalt9b.puban.mrna.gz 2014-Oct, 82M publicset/dmagset7finalt9c.puban.gff.gz 2016-Nov, 28M publicset/dmagset7finloc9b.puban.aa.gz 2014-Oct, 10M publicset/dmagset7finloc9b.puban.cds.gz 2014-Oct, 16M publicset/dmagset7finloc9b.puban.gff.gz 2014-Oct, 11M publicset/dmagset7finloc9b.puban.mrna.gz 2014-Oct, 21M publicset/dmagset7finloc9c.puban.gff.gz 2016-Nov, 11M --------------------------------------- FILE INFORMATION This evigene_daphnia_magna2014 folder contains a complete, reconstructed gene set of Daphnia magna, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents. docs/ : summary documents of genes assembly, annotation, analysis proteins/arp7s10b14nodmag.aa.gz : protein sequences proteins/dmagset7finalt9b.puban.aa.gz : protein sequences proteins/dmagset7finloc9b.puban.aa.gz : protein sequences publicset/ : publication genes sequences and annotations publicset/dmagset7finalt9b.puban.aa.gz : protein sequences publicset/dmagset7finalt9b.puban.cds.gz : coding sequences publicset/dmagset7finalt9b.puban.gff.gz : chromosome map locations publicset/dmagset7finalt9b.puban.mrna.gz : mRNA sequences publicset/dmagset7finalt9c.puban.gff.gz : chromosome map locations publicset/dmagset7finloc9b.puban.aa.gz : protein sequences publicset/dmagset7finloc9b.puban.cds.gz : coding sequences publicset/dmagset7finloc9b.puban.gff.gz : chromosome map locations publicset/dmagset7finloc9b.puban.mrna.gz : mRNA sequences publicset/dmagset7finloc9c.puban.gff.gz : chromosome map locations --------------------------------------- BIBLIOGRAPHICAL INFORMATION RESEARCH QUESTION(S) If you have questions please contact gilbert.bionet@gmail.com --------------------------------------- CHANGELOG --------------------------------------- COPYRIGHT & LICENSING INFORMATION This data is licensed for reuse under a Creative Commons Attribution 3.0 license